LIB format
The format of LIB (Simulated Library) files is simple and condenses the information needed to describe a fragment (RNA or cDNA) of an original transcripts. Each line corresponds to one such fragments and in 3 tab-delimited fields the estart, eend in the spliced sequence (exonic) of the transcript with transcript_id of the original annotation.
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Note: because the simuated transcription start and length of the poly-A tail may vary from the annotation in the reference, values for estart can drop below , and values for eend can take values higher than the transcript length.
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Example
estart | eend | transcript_id |
---|---|---|
1396 | 1623 | uc001aaa.2 |
355 | 583 | uc001aaa.2 |
-43 | 195 | uc001aaa.2 |
407 | 635 | uc001aaa.2 |
278 | 519 | uc009vjk.1 |
330 | 562 | uc009vjk.1 |
-99 | 136 | uc001aaz.1 |