MOVED - FAQ
go to http://sammeth.net/confluence/pages/viewpage.action?pageId=3899429
Thread name | Started | Posts | Recent post |
problems executing annotation step
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by: maria (guest) 13 Jun 2011 10:27 |
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by gmicha 04 Jul 2012 13:19 Jump! |
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by: bogdan_mirauta 13 Apr 2012 09:40 |
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by: ndeng (guest) 18 Mar 2012 04:22 |
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How to know the "TRUE" transcript level abundance when simulating RNA-seq data
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by: mimo (guest) 16 Feb 2012 06:16 |
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by gmicha 17 Feb 2012 15:11 Jump! |
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by: ndeng (guest) 15 Feb 2012 15:32 |
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by Thasso 17 Feb 2012 10:55 Jump! |
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by: sango (guest) 02 Dec 2011 18:32 |
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by sango (guest) 02 Feb 2012 22:46 Jump! |
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by: owomo (guest) 03 Dec 2011 14:21 |
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by owomo (guest) 07 Dec 2011 08:09 Jump! |
getting started doc?
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by: someone (guest) 23 Feb 2011 18:09 |
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by Marty McFly 05 Dec 2011 12:38 Jump! |
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by: Sohail (guest) 07 Jun 2010 18:51 |
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by Marty McFly 05 Dec 2011 12:35 Jump! |
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by: Marcel (guest) 27 Jun 2011 21:02 |
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by Marty McFly 05 Dec 2011 12:34 Jump! |
New sequencing protocols allow sequencing specifically of first- or second-strand cDNAs. It would be great to be able to simulate this.
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by: Joshua Dunn (guest) 13 Jul 2011 20:27 |
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by Marty McFly 05 Dec 2011 12:33 Jump! |
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by: Thomas (guest) 01 Sep 2011 11:09 |
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by Marty McFly 05 Dec 2011 12:32 Jump! |
erors occur when it try to sort a mouse GTF file: Mus_musculus.NCBIM37.63.gtf
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by: Wei (guest) 21 Sep 2011 04:14 |
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by Marty McFly 05 Dec 2011 12:30 Jump! |
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by: wei sun (guest) 25 Sep 2011 16:05 |
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by Marty McFly 05 Dec 2011 12:28 Jump! |
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by: jhyrkas 26 Sep 2011 00:58 |
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by gmicha 30 Sep 2011 12:56 Jump! |
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by: maria (guest) 01 Aug 2011 10:08 |
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by gmicha 10 Aug 2011 12:50 Jump! |
What is the best way to calculate the true RPKM/FPKM from the simulated reads?
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by: mrfox 21 Mar 2011 17:12 |
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by gmicha 16 Jun 2011 16:15 Jump! |
The set of reads I obtained using FluxSim has exceptionally high fraction of polyA reads (around 35%).
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by: mrfox 21 Mar 2011 22:23 |
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by gmicha 16 Jun 2011 16:07 Jump! |
Error occus, need help!
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by: Bo Li (guest) 09 Dec 2010 23:13 |
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by gmicha 10 Dec 2010 07:34 Jump! |
(seen as Issue 40)
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by: gmicha 07 Jun 2010 19:18 |
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by gmicha 07 Jun 2010 19:19 Jump! |